Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs147837458 chr1:93870179 T/C 6.66E-16 489 16.82 28.22 31.37 KM Plot
PRAD rs147900819 chr10:99434673 A/AGAG 4.89E-9 484 31.4 29.13 24.67 KM Plot
PRAD rs147981839 chr9:72847919 G/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs148147782 chr3:14035161 G/A 0.000149 492 30.77 31.37 21.58 KM Plot
PRAD rs148348750 chr5:154144192 T/C 1.12E-8 489 30.3 32.52 20.47 KM Plot
PRAD rs148470426 chr6:52932897 T/C 3.25E-12 481 31.28 30.07 19.43 KM Plot
PRAD rs148997850 chr4:187812719 GAGC/G 2.06E-6 482 31.13 28.75 26.8 KM Plot
PRAD rs149374493 chr4:187811265 T/C 1.99E-6 484 31.23 28.43 26.8 KM Plot
PRAD rs149378310 chr9:72849245 C/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs149553149 chr5:138014836 G/A 7.48E-6 490 30.8 31.33 25.5 KM Plot
PRAD rs149612900 chr9:72863506 T/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs149747976 chr7:6781836 G/A 7.73E-5 486 31.12 29.97 38.33 KM Plot
PRAD rs149864823 chr5:154211014 T/TG 0 492 29.97 37.43 4.87 KM Plot
PRAD rs150347002 chr5:154334547 C/A 6.14E-7 489 30.3 34.52 20.47 KM Plot
PRAD rs150361979 chr1:16339669 AGGGGGCTGCT/A 2.4E-5 493 31.9 25.83 67.52 KM Plot